Changes since 2013-08-01 (44 days ago)
File: genome_Thejesh_GN.txt
Generated: 2013-09-14 18:37
Version: 0.1.158
Ethnicity: CEU
Notable
#1 changes (unchanged)
mag=3.0 freq=33.6% repute=Bad
23928854 A functional variant of pre-miRNA-196a2 confers risk for Behcet's disease but not for Vogt-Koyanagi-Harada syndrome or AAU in ankylosing spondylitis
#2 changes (unchanged)
mag=3.0 freq=35.6% repute=Bad
CLNDSDBID=NBK1440:C0392514:235200:35400008; CN034317:612635
CLNDSDB=GeneReviews:MedGen:OMIM:SNOMED_CT; MedGen:OMIM
CLNACC=SRCV000000020169.1; SRCV000000020170.1
CAF=0.9164; 0.08356
CLNSRC=GTR; OMIM Allelic Variant
Tags=PM;PMC;S3D;SLO;NSM;REF;INT;ASP;VLD;G5;HD;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG;PH3;LSD;MTP;OM
COMMON=1
VP=0x0503680808a050115051f130100
CLNSRCID=613609.GTR000219921; 613609.0002
#3 changes (unchanged)
mag=3.0 freq=41.6% repute=Bad
23912956 Associations with growth factor genes (FGF1, FGF2, PDGFB, FGFR2, NRG2, EGF, ERBB2) with breast cancer risk and survival: the Breast Cancer Health Disparities Study
#4 changes (unchanged)
mag=3.0 freq=50.4% repute=Bad
23933542 The 9p21 locus does not affect risk of coronary artery disease through induction of type 1 interferons
#5 changes (unchanged)
mag=2.7 freq=100.0%
CLNDSDBID=C2676042:113750
CLNDSDB=MedGen:OMIM
CLNACC=SRCV0000015521707.1
CAF=0.4775; 0.5225
Tags=PM;PMC;SLO;NSM;REF;ASP;VLD;G5;HD;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG;PH3;LSD;MTP;OM;GCF
COMMON=1
VP=0x050168000a050115051f130101
CLNSIG=255
#6 changes (unchanged)
mag=2.6 freq=1.8% repute=Bad
23454283 Low frequency genetic variants in the -opioid receptor (OPRM1) affect risk for addiction to heroin and cocaine
ClinVar Reclassified - variant of unknown significance
#7 changes (unchanged)
mag=2.5 freq=38.9% repute=Bad
CLNDSDBID=C0011860:125853:44054006
CLNDSDB=MedGen:OMIM:SNOMED_CT
CLNACC=RCV000001055.1
CLNDBN=Diabetes mellitus type 2
CAF=0.7176; 0.2824
CLNSRC=OMIM Allelic Variant
Tags=PM;PMC;SLO;NSM;REF;ASP;VLD;G5;HD;GNO;KGPhase1;KGPROD;OTHERKG;PH3;LSD;MTP;OM;GCF
COMMON=1
Disease=Diabetes mellitus type 2
VP=0x050168000a0501150517130101
CLNSRCID=611145.0001
#8 changes (unchanged)
mag=2.5 freq=58.3% repute=Bad
CLNDSDBID=C1853147:610698; C0730295:126700:75376:312926005
CLNDSDB=MedGen:OMIM; MedGen:OMIM:Orphanet:SNOMED_CT
CLNACC=SRCV0000318294015.1; SRCV0000318295016.1
CAF=0.2778; 0.7222
Tags=PM;PMC;S3D;SLO;NSM;REF;ASP;VLD;G5A;G5;HD;GNO;KGPhase1;KGPROD;OTHERKG;PH3;LSD;MTP;OM;GCF
COMMON=1
VP=0x050368000a0501170517130101
CLNSRCID=134370.0008; 134370.0008
23919682 Complement alternative pathway genetic variation and Dengue infection in the Thai population
#9 changes (unchanged)
mag=2.5 repute=Bad
23939236 Variation in IFNL4 genotype and response to interferon-based therapy of hepatitis C in HIV-positive patients with acute and chronic hepatitis C
23231085 IL28B polymorphisms predict response to therapy among chronic hepatitis C patients with HCV genotype 4
#10 changes (unchanged)
mag=2.2 freq=35.1% repute=Bad
Gene=T
Assembly=GRCh37.p510
GenomeBuild=37.35
dbSNPBuild=1378
Gene_s=T
Rare
#1 changes (create)
freq=0.0%
ClinVar
#2 changes (create)
freq=0.0%
Assembly=GRCh37.p10
GenomeBuild=37.15
Gene_s=IL6,MIR632
dbSNPBuild=1318
#3 changes (create)
freq=0.0%
Assembly=GRCh37.p10
GenomeBuild=37.15
Gene_s=IL6,MIR632
dbSNPBuild=1318
23415255 Association of Interleukin 6 gene polymorphisms with genetic susceptibilities to spastic tetraplegia in males: a case-control study
#4 changes (create)
freq=0.0%
Assembly=GRCh37.p10
GenomeBuild=37.15
Gene_s=SESN3
dbSNPBuild=1328
#5 changes (unchanged)
freq=0.0% repute=
Assembly=GRCh37.p10
GenomeBuild=37.15
Gene_s=METTL21D
dbSNPBuild=1328
#6 changes (unchanged)
freq=0.0%
CLNACC=RCV000015930.1
CLNDBN=Atopic asthma, susceptibility to
CAF=0.8806; 0.1194
CLNSRC=OMIM Allelic Variant
Tags=RV;PM;PMC;SLO;NSM;REF;ASP;VLD;G5;HD;GNO;KGPhase1;KGPROD;OTHERKG;PH3;LSD;OM;GCF
COMMON=1
Disease=Atopic asthma
VP=0x050168000a0501150517110101
CLNSRCID=147138.0001
CLNHGVS=NC_000011.89:g.59863196804A>G
#7 changes (create)
freq=0.0%
23415255 Association of Interleukin 6 gene polymorphisms with genetic susceptibilities to spastic tetraplegia in males: a case-control study
24003533 Relationship between cytokine single nucleotide polymorphisms and sarcoidosis among Japanese subjects
#8 changes (create)
freq=0.9%
23962496 The protective effect of LRRK2 p.R1398H on risk of Parkinson's disease is independent of MAPT and SNCA variants
#9 new (create)
freq=0.9%
23502783 The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.
#10 changes (create)
freq=1.8%
23924473 Association between the polymorphisms of interleukin-4, the interleukin-4 receptor gene and asthma
23964553 Relationship between polymorphisms in IL4 and asthma in Japanese women: the Kyushu Okinawa Maternal and Child Health Study